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BGA23
Sessions
Aligning whole genomes using Cactus
Annotating genomes the Ensembl way
Assembling Genomes with the VGP-Galaxy Pipeline
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi
Assess genome assemblies with Merqury
BUSCO - from QC to gene prediction and phylogenomics
Checking for cobionts in public genomes using BlobToolKit
Classifying Transposable Elements with Earl Grey TE
Compare whole genome assembly alignments using NCBI’s Comparative Genome Viewer (CGV)
EASEL software for eukaryotic structural and functional genome annotation
ENA data retrieval and EMBL-EBI's Biodiversity Portals
ENA Standards and Submission
Genome profiling using GenomeScope
gfastar - a tool suite to assist genome assembly
Introduction to Manual Curation - HiC and JBrowse
Introduction to NextFlow for genomics
OMA and OMArk for homology exploration and gene annotation quality control
Pangenome Assembly and Assessment using Minigraph and Bandage
Querying genome metadata and sequencing projects using GoaT
Scalable telomere-to-telomere assembly with hifiasm
Searching and Downloading Genome Data using NCBI Datasets
Starting a comparative genome study from CNGBdb-datasets, analysis platform, and spatial transcriptomics database
The Treeval pipeline Generating evidence for manual curation
Understanding k-mers and ploidy using Smudgeplot
Visualising genome assembly cobionts by running BlobToolKit locally
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BGA24
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TreeVal
TreeVal-Tutorial
sessions
A deep dive into JBrowse 2 functionality
Actioning the CARE Principles in Biodiversity Genomics Data and Metadata using Local Contexts Labels and Notices
Annotating genomes the Ensembl way
ASCC
Assembling Genomes with the VGP-Galaxy Pipeline
BUSCO
Collaborative Annotation with Apollo 3
De novo assembly with Colora
Easel and Entap
ENA Standards and Submission
Exploring Satellite DNA using ModDotPlot
Gene prediction with BRAKER3
Genome profiling using GenomeScope
genome-note-publications
Gfastar-a tool suite to assist genome assembly
Inkscaping-graphs
Introduction to Manual Curation - HiC and JBrowse
Introduction to phylogenetic analysis
Manual curation of bird microchromosomes with HiC and gene mapping
OMA and OMArk for homology exploration and gene annotation quality control
Production in Galaxy for users and developers
Querying genome metadata and sequencing projects using GoaT
T2T with Verko
Thinking in Cobiont Space
ToL Assembly Pipeline
ToL Core Lab - Interactive DNA decision making and Q&A
Tree of Life Core Lab - Wet lab protocols
TreeVal-Generating evidence for manual curation
Understanding k-mers and ploidy using Smudgeplot
Wise Ancestors
Homepage for BGA24!
Workflow Tracks for 2024
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6 - EBP Analysis
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Generating_a_reference
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Tag: #Generating_a_reference/3
Tag: #Generating_a_reference/3
1 item with this tag.
Jan 20, 2025
Introduction to Manual Curation - HiC and JBrowse
#BGA24/sessions
#GitPod
#Generating_a_reference/3