#BGA23/sessions#Workshop#Pipeline#Visualisation#Cobionts#BlobToolKit#BTK
This session may now be out of date so beware!!!
This session is part of BGA23
Session Leader(s)
Sujai Kumar
Senior Bioinformatician and Training Coordinator
Rich Challis
Senior Bioinformatician
Tree of Life Programme, Wellcome Sanger Institute
Description
GitHub:: https://github.com/BGAcademy23/btk-cli
By the end of this session you will be able to:
- Install BlobToolKit (BTK) on your own system
- Starting from an assembly fasta file and a bam file with reads mapped to the assembly, you will be able to create a blobdir and view the BTK plot
Session Materials
Prerequisites
- Familiarity with linux command line basics (
cd,mv,rm,wget,curletc) - Understanding of genome assembly concepts such as DNA sequencing, and how short and long sequenced reads are assembled into contigs, scaffolds, and chromosomes
!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above"
You will get the most out of this session if you meet the prerequisites above.
Please also read the description carefully to see if this session is relevant to you.
If you don’t meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend.