#BGA24/sessions#GitPod#Pipeline#Nextflow#Visualisation#Cobionts
This session is part of BGA24
Session Leader(s)
Wellcome Genome Campus
- Eerik Aunin, PhD
- Damon-Lee Pointon
Description
The Automated System for Cobiont and Contamination detection, is an NF-Core based pipeline that allows for the detection of cobionts and contaminant sequence from a genomic assembly. This is achieved through the generation of Blobtoolkit compatible graphs for manual investigation and automated contamination removal.
Prerequisites
- Understanding of linux command line basics
- An understanding of running Nextflow Pipelines
"Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above"
You will get the most out of this session if you meet the prerequisites above.
Please also read the description carefully to see if this session is relevant to you.
If you don’t meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email damon at thebgacademy.org to cancel your slot so that someone else on the waitlist might attend.