#BGA23/sessions#Orthology#Homology#OMA#OMArk#Annotation#QC#Workshop
This session may now be out of date so beware!!!
This session is part of BGA23
Session Leader(s)
Yannis Nevers
Post-doctoral researcher; OMArk’s main developer
University of Lausanne and Swiss Institute of Bioinformatics
Post-doctoral researcher
University of Lausanne and Swiss Institute of Bioinformatics
Description
GitHub:: https://github.com/BGAcademy23/oma-omark
By the end of this session the participant will be able to:
- Query information on the OMA Browser and navigate OMA’s Hierarchical Orthologous Groups.
- Install and use OMAmer to quickly find the most likely Hierarchical Orthologous Groups for protein sequences.
- Install and use OMArk to perform quality assessment for a proteome FASTA file, with or without splicing variants.
- Interpret OMArk quality metrics and the detailed information available in its output.
- Use the OMArk website to compare quality assessments within a clade.
Prerequisites
- Understanding the terms homology, orthology, proteome.
- Familiarity with linux command line basics (cd, mv, rm, wget, curl etc)
!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above"
You will get the most out of this session if you meet the prerequisites above.
Please also read the description carefully to see if this session is relevant to you.
If you don’t meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend.
For this session, the written material can be found on https://oma-stage.vital-it.ch/oma/academy/BGA\_session
Please use Gitpod for the command-line exercices.