#BGA24/sessions#GitPod#Annotation#Workshop
This session is part of BGA24
YouTube Recording ⇐ To be updated after BGA24
Session Leader(s)
Cynthia Webster - PhD Student @ University of Connecticut
Alex Hart
Description
*What is genome annotation? *Current challenges *Best practices; Introduction to functional annotation with EnTAP; Introduction to structural and functional annotation with EASEL; Running EnTAP as a standalone tool: *Installing dependencies *Setting parameters and executing; Running EASEL: *Installing dependencies *Setting parameters and executing; Annotating Juglans cinerea with EASEL and EnTAP: *Evidence generation *Gene prediction *Secondary and primary feature filtering *Evaluation *Benchmarking against commonly used annotation tools; By the end of this session you will be able to: (1) Structurally annotate a eukaryotic genome assembly with protein and RNA extrinsic evidence using the EASEL nextflow pipeline, (2) Assess non-model structural genome annotations with comprehensive metrics that include providing functional annotation with EnTAP, (3) Address challenges with accuracy and efficiency with structural and functional genome annotation.
Prerequisites
- Understanding of linux command line basics
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