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BGA23
Sessions
Aligning whole genomes using Cactus
Annotating genomes the Ensembl way
Assembling Genomes with the VGP-Galaxy Pipeline
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi
Assess genome assemblies with Merqury
BUSCO - from QC to gene prediction and phylogenomics
Checking for cobionts in public genomes using BlobToolKit
Classifying Transposable Elements with Earl Grey TE
Compare whole genome assembly alignments using NCBI’s Comparative Genome Viewer (CGV)
EASEL software for eukaryotic structural and functional genome annotation
ENA data retrieval and EMBL-EBI's Biodiversity Portals
ENA Standards and Submission
Genome profiling using GenomeScope
gfastar - a tool suite to assist genome assembly
Introduction to Manual Curation - HiC and JBrowse
Introduction to NextFlow for genomics
OMA and OMArk for homology exploration and gene annotation quality control
Pangenome Assembly and Assessment using Minigraph and Bandage
Querying genome metadata and sequencing projects using GoaT
Scalable telomere-to-telomere assembly with hifiasm
Searching and Downloading Genome Data using NCBI Datasets
Starting a comparative genome study from CNGBdb-datasets, analysis platform, and spatial transcriptomics database
The Treeval pipeline Generating evidence for manual curation
Understanding k-mers and ploidy using Smudgeplot
Visualising genome assembly cobionts by running BlobToolKit locally
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A deep dive into JBrowse 2 functionality
Actioning the CARE Principles in Biodiversity Genomics Data and Metadata using Local Contexts Labels and Notices
Annotating genomes the Ensembl way
ASCC
Assembling Genomes with the VGP-Galaxy Pipeline
BUSCO
Collaborative Annotation with Apollo 3
De novo assembly with Colora
Easel and Entap
ENA Standards and Submission
Exploring Satellite DNA using ModDotPlot
Gene prediction with BRAKER3
Genome profiling using GenomeScope
genome-note-publications
Gfastar-a tool suite to assist genome assembly
Inkscaping-graphs
Introduction to Manual Curation - HiC and JBrowse
Introduction to phylogenetic analysis
Manual curation of bird microchromosomes with HiC and gene mapping
OMA and OMArk for homology exploration and gene annotation quality control
Production in Galaxy for users and developers
Querying genome metadata and sequencing projects using GoaT
T2T with Verko
Thinking in Cobiont Space
ToL Assembly Pipeline
ToL Core Lab - Interactive DNA decision making and Q&A
Tree of Life Core Lab - Wet lab protocols
TreeVal-Generating evidence for manual curation
Understanding k-mers and ploidy using Smudgeplot
Wise Ancestors
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Tag: #BGA23
Tag: #BGA23
25 items with this tag.
Oct 18, 2024
Assembling Genomes with the VGP-Galaxy Pipeline
#BGA23/sessions
#Galaxy
#VGP
#Pipeline
#Assembly
#Reads-to-Reference/1
#Workshop
Oct 18, 2024
The Treeval pipeline Generating evidence for manual curation
#BGA23/sessions
#Nextflow
#Pipeline
#TreeVal
#Visualisation
#Reads-to-Reference/2
#Workshop
Oct 18, 2024
Understanding k-mers and ploidy using Smudgeplot
#BGA23/sessions
#Kmers
#Smudgeplot
#Workshop
Oct 18, 2024
Pangenome Assembly and Assessment using Minigraph and Bandage
#BGA23/sessions
#Assessment
#Bandage
#Minigraph
#Workshop
Oct 18, 2024
OMA and OMArk for homology exploration and gene annotation quality control
#BGA23/sessions
#Orthology
#Homology
#OMA
#OMArk
#Annotation
#QC
#Workshop
Oct 18, 2024
Introduction to NextFlow for genomics
#BGA23/sessions
#Pipeline
#Nextflow
#NF-Core
#Workshop
Oct 18, 2024
Searching and Downloading Genome Data using NCBI Datasets
#BGA23/sessions
#Data_download
#NCBI_datasets
#Workshop
Oct 18, 2024
Compare whole genome assembly alignments using NCBI’s Comparative Genome Viewer (CGV)
#BGA23/sessions
#Visualisation
#NCBI
#QC
#Workshop
Oct 18, 2024
Assess genome assemblies with Merqury
#BGA23/sessions
#Merqury
#Kmers
#Tools
#Workshop
Oct 18, 2024
Introduction to Manual Curation - HiC and JBrowse
#BGA23/sessions
#Process
#Curation
#Reads-to-Reference/3
#Pretext
#Workshop
Oct 18, 2024
Scalable telomere-to-telomere assembly with hifiasm
#BGA23/sessions
#Assembly
#HiFiasm
#Tools
#Workshop
Oct 18, 2024
Querying genome metadata and sequencing projects using GoaT
#BGA23/sessions
#GOAT
#Tools
#Web_portal
#Workshop
Oct 18, 2024
gfastar - a tool suite to assist genome assembly
#BGA23/sessions
#Tools
#Gfastar
#QC
#Workshop
Oct 18, 2024
Genome profiling using GenomeScope
#BGA23/sessions
#QC
#GenomeScope
#Kmers
#Tools
#Workshop
Oct 18, 2024
Annotating genomes the Ensembl way
#BGA23/sessions
#Annotation
#Ensembl
#Pipeline
#Workshop
Oct 18, 2024
ENA data retrieval and EMBL-EBI's Biodiversity Portals
#BGA23/sessions
#ENA
#Data_download
#Web_portal
#DTOL_portal
#Workshop
Oct 18, 2024
ENA Standards and Submission
#BGA23/sessions
#ENA
#Submission
#Standards
#Workshop
Oct 18, 2024
EASEL software for eukaryotic structural and functional genome annotation
#BGA23/sessions
#EASEL
#Annotation
#Pipeline
#Workshop
Oct 18, 2024
Classifying Transposable Elements with Earl Grey TE
#BGA23/sessions
#Workshop
#Earl_Grey_TE
#Transposable_elements
#TEs
#Annotation
Oct 18, 2024
Starting a comparative genome study from CNGBdb-datasets, analysis platform, and spatial transcriptomics database
#BGA23/sessions
#Genomic_study
#CNGdb
#Transcriptomics
Oct 18, 2024
Aligning whole genomes using Cactus
#BGA23/sessions
#Workshop
#Cactus
#Alignments
#Tools
Oct 18, 2024
BUSCO - from QC to gene prediction and phylogenomics
#BGA23/sessions
#Pipeline
#Workshop
#BUSCO
#Gene_prediction
#Phylogenomics
#QC
Oct 18, 2024
Checking for cobionts in public genomes using BlobToolKit
#BGA23/sessions
#Workshop
#Tools
#Cobionts
#BlobToolKit
#BTK
Oct 18, 2024
Visualising genome assembly cobionts by running BlobToolKit locally
#BGA23/sessions
#Workshop
#Pipeline
#Visualisation
#Cobionts
#BlobToolKit
#BTK
Oct 18, 2024
Assembling Mitogenomes from PacBio HiFi reads using MitoHiFi
#BGA23/sessions
#MitoHiFi
#Assembly
#Mitochondrion
#PacBio
#Pipeline
#Workshop